List of generic simulation software/tools/resource with brief description and homepage !!!
...ers-birc.au.dk/mailund/coasim/index.htmlcosi The cosi package is...esearchinstitute.com/software/index.htmlfastsimcoal A continuous-...oject.org/web/packages/hapsim/index.htmlHAPSIMU A program that si...code.sourceforge.net/sfs_code/index/index.htmlSIBSIM Quantitative...3791 days ago
List of In-silico Binding Site Prediction Tools
...re.ulb.ac.be/Users/benoit/LigASite/index.php?home is a gold-standard d...e. KBDOCK: http://kbdock.loria.fr/index.php is a 3D database system t.... ProBiS: http://probis.cmm.ki.si/index.php algorithm for detec...http://pdbfun.uniroma2.it/pfinder/index.html Pfinder is a bioin...3798 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides a...3679 days ago
Commercial and public next-gen-seq (NGS) software
...e SWIFT suit is a software collection for fast index-based sequence comparison. It...mory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link to discussion thread he...e SWIFT suit is a software collection for fast index-based sequence comparison. It...3573 days ago
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List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bioresources and Sustainable Development (IBSD),...2625 days ago
Software packages for next gen sequence analysis
...on with 2 gigabytes of memory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link to discussion thread he...Bergman NH. * SWIFT - The SWIFT suit is a software collection for fast index-based sequence comparison. It...3297 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of inte...2256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...gned with GATK) Reference Genome: indexed FASTA file Output: VCF fil...rence Genome: FASTA (files must be indexed using Samtools or similar p...mor-normal paired data Input: BAM index files (normal and tumor) Out...put; Simple yes/no and reliability index PROVEAN Description:...2963 days ago