Useful Publications and Websites for Deep Sequencing Data Analysis
...Next generation quantitative genetics in plants. Jiménez-G&oa...ly informative genotyping for molecular breeding of Eucalyptus. Sans...me duplication. Amores et al, Genetics 188(4):799-808, 2011. PubMed...n et al., G3: Genes, Genomes, Genetics, 1:171-182, 2011. Full Text,...3822 days ago
List of bioinformatics open source projects/software.
...-project.org/ C++ library and framework for molecular modeling and visualization de...data IntAct http://www.ebi.ac.uk/intact/ molecular interaction database InterMi...ra T-REX WebServer Bioinformatics and phylogenetics webserver (NJ, PhyML, RAxML,...3799 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emerge...ocess. http://badri-populationgeneticsimulators.blogspot.com/FPG For...the Monte Carlo simulation of molecular sequence evolution along phy...based forward-time population genetics simulation environment. http:...3780 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Protei...el (Richards' surface) and by molecular surface model (Connolly's sur...s.cgi is the NCBI Inferred Biomolecular Interactions Server. For a gi...ep towards characterizing its molecular function. Numerous structure-...3787 days ago
Commercial and public next-gen-seq (NGS) software
...n. SHARCGS - De novo assembly of short reads. Authors are Dohm JC, Lottaz C, Borodina T and Himmelbauer H. from the Max-Planck-Institute for Molecular Genetics. SSAKE - The Short Sequence A...3562 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and anal...n iPhone/iPad/iPod touch application designed for molecular biologists, bioinformaticians...rchical) system is used to identify all published molecula...3584 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyde...R Headquarters CCMB - Centre for Cellular & Molecular Biology, Hyderabad CECRI -...aphy Hyderabad Centre for Cellular and Molecula...2613 days ago
Software packages for next gen sequence analysis
...* SHARCGS - De novo assembly of short reads. Authors are Dohm JC, Lottaz C, Borodina T and Himmelbauer H. from the Max-Planck-Institute for Molecular Genetics. * SSAKE - The Short Sequence...3285 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a...are not only an appropriate approach to visualize molecular reactions. They have also bec...Caleydo Visual analysis framework targeted at biomolecula...2330 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...from Clinvar, dbSNP, Genbank:http://www.softgenetics.com/PDF/NextGene_UsersManual_w...in phenotype- “that directly tests the molecular mechanisms through which gene...ing, or identification of causal variants in molecular diagnosis, tumor sequencing,...2951 days ago