2756 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...A Output: VCF SOAPindel Description: detects indels from NGS paired-end sequencing Input: files with...Q Output: VCF indelMINER Description: identifies indels from paired-end reads Input: BAM (aligned in...2951 days ago
2956 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation...2253 days ago
2916 days ago
2911 days ago
Genome Assembly Tools and Software - PART1 !!
...ion, sequence COmposition and paired-end read LinkAge MaxBin 2.2...ss ones.2.Scaffolding. We use paired-end reads to connect repeat conti...bly Program Opera (Optimal Paired-End Read Assembler) is a sequence...al Quasispecies Assembly from Paired-end data HaploClique is a comp...2728 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely t...2701 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. T...ds span within an interval [δmin,δmax]. Most (>90%) of paired-end reads are sampled from no-SV...2564 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...e (C++) http://www.csbio.unc.edu/rs/ Variant calling ChimeRScope Fusion transcript prediction using gene k-mers profiles of the RNA-seq paired-end reads Software (Java) https...2413 days ago