Results for "denovo sequencing"
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepa...r specified models. http://research.nhgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator http://sourcef...3764 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file format...3655 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data anal...tionality for short read sequences produced by high throughput sequencing technologies. While support is provided for many sequencing technologies, this package is...3652 days ago
Commercial and public next-gen-seq (NGS) software
...obtained from next-generation sequencing machines (specifically that o...s, emerged by next-generation sequencing technology, back to the refer...ences Centre. Perl/Linux. SOAPdenovo - Part of the SOAP suite. See abo...ompleted will handle next-gen sequencing data. A partially implemented...3546 days ago
- Since few years miRNA has shown to play im...nd tools related with miRNA: miRNA Sequencing data analysis : http://t... http://starbase.sysu.edu.cn/ Sequencing based miRNA DB : http://...ction.html Idea of analysing miRNA Sequencing data : http://www.illumina.c...
3523 days ago
Apps for Busy Bioinformatics Researchers !!!
...e opening and analysis of DNA sequencing files - ab1. It includes hand...determine the quality of your sequencing files. This app works with c...e opening and analysis of DNA sequencing files - ab1. It includes hand...yzing cases with whole genome sequencing data that have been published...3569 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basics of R, focusing on...lication specific tasks. e.g. analysis of microarray experiments and Next-Gen sequencing (bioconductor: including Bios...3389 days ago
Software packages for next gen sequence analysis
...obtained from next-generation sequencing machines (specifically that o...s, emerged by next-generation sequencing technology, back to the refer...ces Centre. Perl/Linux. * SOAPdenovo - Part of the SOAP suite. See abo...es from the 454 Life Sciences sequencing machines. It was designed to...3270 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...generates visualization DeNovoGear Description: de-novo varia...t: pair of VCF files Triodenovo Description: Bayesian framewor...rdquo;can accept a variety of sequencing inputs and configurations&rdq...s mutations discovered in DNA sequencing to identify genes that were m...2936 days ago
- alignment: the mapping of a raw sequence r...for each base; usually generated by sequencing machines. genotype likelihoo...f G to A. mate-pair: in paired-end sequencing, both ends of a single DNA or...cation is covered by 30 independent sequencing reads. Increased read-depth t...
2896 days ago
