Results for "Arabidopsis data"
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Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS...teractions, COSMIC mutations, and CNV data for cell lines. Does not require a network connection for local databases. View and search PubMed...ed, Genomic Variations and many other databases to retrieve up-to-date a...3595 days ago
- Pathway Analysis is usually performed with aim to...omics, transcriptomics and proteomics data, interactions between genes i...ation in one of the pathway knowledge databases (KEGG,Reactome,Panther,B...c/Pathways_2014_Module2.pdf Impotant Database and Tools: GeneMANIA, Cy...
3549 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the ba...ted script to perform again and again on different data Disadvantages Lack...ation (Optional) Download and save the tutorial data set from http://bioinforma...3415 days ago
Software packages for next gen sequence analysis
...Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software th.... Supports Illumina and SOLiD data. De novo Align/Assemble * AB...Bisulphite Sequencing of the Arabidopsis Genome Reveals DNA Met...nding sites based on ChIP-Seq data. (C++) * SISSRs - Site Identi...3296 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key...one leading method in -omics data analysis and visualization....work targeted at biomolecular data. Visualization of interdepend...bsp; Visualizing multi-omics data in metabolic networks https:...ronment composed of a central database and a visual editor, buil...2340 days ago
- Reformat is a member of the BBMap/BBTools package. It is a mul...designed for converting reads or other nucleotide data between different formats. It...rleaved files It is multithreaded and can process data at over 500 megabytes per sec...
2767 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers...other aligners Aligns exome data and performs variant calling...BED, Agilent files, NimbleGen data summary files, VCF files, Imp...om high-throughput sequencing datasets; calls variants found in...”; no actual expression data used, only in silico expressi...2962 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 ....txt) Note: You can download GTF files from http://www.ensembl.org/info/data/ftp/index.html
2159 days ago
- alignment: the mapping of a raw sequence...ressed format for storing SAM data. BCF Format: Binary call for...ressed format for storing VCF data. CIGAR String: Compact Idios...rmat for storing raw sequence data. For example, the FASTA file...des multiple elements of meta-data regarding a read and its alig...
2922 days ago
Genome Assembly Tools and Software - PART1 !!
...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatted...wever, assembling metagenomic datasets has proven to be computat...ide Assembler for Metagenomic Data SFA-SPA is a suffix array...me high-throughput sequencing datasets. SPAdes 3.6.2 &ndash...2739 days ago
