Results for "B"
Top-level pages
Bioinformatics infrastructure speed up Indian agriculture
"Realizing the paradigm shift it can bring about, the government is focusing on increased bioinformatics intervention in agri-sciences. Currently under process, the national grid on bioinformatics is expected make...3765 days ago
List of bioinformatics open source projects/software.
...ence Application") http://wolbachia.biology.virginia.edu/WuL...UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy Enzyme...representation environment EMBOSS http://emboss.sourceforge...Staden Package Sequence assembly, editing and analysis, prim...3812 days ago
List of In-silico Binding Site Prediction Tools
...tions to small molecules that bind to the active and/or regul...ediction. MetaPocket is available at http://metapocket.eml.or...f this prediction process can be automated, visual inspection...portant for the prediction of binding and function. Here, we...3800 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...s governing organism movement behavior. http://cel.dbs.umt.ed....ch/dee/page36926_fr.htmlEggLib EggLib is a C++/Python librar...=241GENOME A rapid coalescent-based whole genome simulator ht...of sequence evolution http://bit.ly/rlsim-gitpIRS Profile-ba...3793 days ago
Linux for bioinformatician !!!
...ctively and handle huge amount of genomic/biological data with an ease. The field of bioinformatics relies heavily o...tools are and how to use them, you could be spending lot of time trying...ul Stothard. Linux cheat sheet at http://bioinformaticsonline.com/file/v...3761 days ago
Perl one-liner for bioinformatician !!!
...ude changing line spacing, numbering lines, doing calculation...'$_ .= "\n" unless /^$/' #double space a file except blank l...t;>)' #prints the total number of non-empty lines in a fil...pe '/regexp/ && s/foo/bar/' #Substitute a foo with a...3684 days ago
Next generation sequencing in R or bioconductor environment
...some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanc...store additional information about sequence ranges, such as c...rsing and inspecting samtools BAM formatted binary alignment...r to compare the results from both methods by identifying the...3680 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illum...Burrows-Wheeler-Transformed (BWT) index. Link to discussion...Wunsch algorithm. Can support Bis-Seq. Commercial. Available...of short nucleotide sequences by progressively searching for...3575 days ago
- ...ion levels. Here are some important DBs and tools related with miRNA...: miRNA Sequencing data analysis : http://tools.genxpro.net/om...bsp;http://www.targetscan.org/ RNAhybrid : http://bibiserv.tec...tar/ Animal, plant and virus miRNA DB : http://lemur.amu.edu.p...
3552 days ago
- Subprocess is one of simplest way of running linux comman...you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call...tderr p.stdout.close() More: http://pymotw.com/2/subprocess/
3605 days ago
