Results for "CA"
Top-level pages
List of In-silico Binding Site Prediction Tools
...Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of S...eloped by David Koes from the Camacho Lab in the Department of...diction groups tested at both CASP8 and CASP9.RESULTS: The Fun...tially conserved physico-chemical interactions, which often in...3762 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...//web.up.ac.za/default.asp?ipkcategoryid=3283CoaSim CoaSim is...estigating methods in statistical genetics by generating sampl...(MENDEL) is an advanced numerical simulation program for model...ww.evolution-of-life.com www.cancer.gov3755 days ago
Linux for bioinformatician !!!
...manage your systems effectively and handle huge amount of genomic/biological data with an ease. The field...Linux-based computers and software. Although most bioinformatics programs can be compiled to run. If you d...3723 days ago
Perl one-liner for bioinformatician !!!
...ine spacing, numbering lines, doing calculations, converting and sub...g files in-place, doing statistics, carrying out system administrati...for all the lines)perl -le 'print scalar(grep{/./}<>)' #print...print uc' #Convert all text to uppercase:perl -nle 'print lc' #Conve...3646 days ago
Next generation sequencing in R or bioconductor environment
...on for representing genomic locations within the Bioconductor...ChIP-seq experiments, but it can be applied to any ranked lis...his data is retrieved automatically via the Internet, so it's...The edgeR package uses empirical Bayes estimation and exact t...3643 days ago
Commercial and public next-gen-seq (NGS) software
...tional analysis and visualization capabilities. Can use a hybrid templated/de no...source. ELAND - Efficient Large-Scale Alignment of Nucleotide Dat...f Toronto. POSIX. Slider- An application for the Illumina Sequence...s and Mac PolyBayesShort - A re-incarnation of the PolyBayes SNP d...3537 days ago
- ...vital role in controlling gene expression specifically at transcriptional and pos....umm.uni-heidelberg.de/apps/zmf/mirwalk/ TargetScanHuman : http://www.targe...a/home.do Plant miRNA DB :http://bioinformatics.cau.edu.cn/PMRD/ miRBASE DB:&nb...
3514 days ago
- ...t way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f","fa...
3567 days ago
Apps for Busy Bioinformatics Researchers !!!
...n information tool for biological research. Use BioGene to lea...a's website. This client application is an independent project...basis of disease by analyzing cases with whole genome sequenci...GeneGroove is the first application to create a music melody...3560 days ago
- ...on and reveal the underlying biological mechanisms pursue by genes....is not only limited to what biological pathways a particular set of...databases (KEGG,Reactome,Panther,BioCarta, Panther,GO,NCI,WikiPathwa...org/p/42219/ http://bioinformatics.ca//files/public/Pathways_2014_M...
3514 days ago
