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Bioinformatics infrastructure speed up Indian agriculture
"Realizing the paradigm shift it can bring about, the government is focusing on increased bioinformatics intervention in agri-sciences. Currently under process, t...grid on bioinformatics is expected make much better sense out of huge genomic" - ht...3761 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form) by anyone. Open source software is...skell.org/ Haskell (programming language) BioJava http://b...and clinicians for expertise and knowledge exchange. Database...3808 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Protei...ture to predict a ligand binding site. SitesBase: http://www...accessible surface area does not distinguish between atoms j...le for a variety of applications such as automated ligand doc...3796 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://www.cbrg....Software: Simulates complex SNP models with pure, strict epi...mators or statistical tests, and generally to aid in the inte...3789 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help you to manage your systems effectively a...ith an ease. The field of bioinformatics relies heavily on Li...t at http://bioinformaticsonline.com/file/view/87/linux-cheat...3757 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around mass...k lines into 4 consecutive blank linesperl -pe '$_ = "$. $_"'...ax=15; $, = " "; print map { int(rand($max-$min))+$min } 1..$...3680 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package fro...klayer rtracklayer provides an interface for exporting annot...ad counting provided by this infrastructure are countOverlaps...3676 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Co...rogram). A program for efficient gapped and ungapped alignmen...assembler viewer. EagleView can display a dozen different typ...3571 days ago
- Since few years miRNA has shown to play important role in therapeutic related research...levels. Here are some important DBs and tools related with m...alk DB : http://www.umm.uni-heidelberg.de/apps/zmf/mirwa...psRNATarget/ miRNA Interaction DB : http://starbase.sys...
3548 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you w...C of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc",...ad.fastq","r") ,stdout=PIPE,stderr=PIPE) print p.stderr p.stdout.close()...
3601 days ago
