Results for "PA"
Top-level pages
List of bioinformatics open source projects/software.
...UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy Enzyme DB Bioclipse www.b...language) BioJava http://biojava.org/wiki/Main_Page Java (programming language...on platform GMOD http://www.gmod.org/wiki/Main_Page Toolkit for addressing man...3784 days ago
List of In-silico Binding Site Prediction Tools
...tional database, we collected the spatial patterns of protein binding site...S also infers/predicts interacting partners and binding sites by ho...Exploitation of locally similar 3D patterns of physicochemical prop...otein structures. Tunnels are void pathways leading from a cavity b...3771 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...oasim/index.htmlcosi The cosi package is written in C and is a...q, employing a minimal set of parameters. http://flux.sammeth..../projects/bargen/kernalPop A spatially explicit population gen...he transmission of genes from parents to offspring in a popula...3765 days ago
Linux for bioinformatician !!!
...plesae read this article "An introduction to Linux for bioinformatics" by Paul Stothard. Linux cheat shee...com/file/view/87/linux-cheat-sheet Please browse for futher useful linux pages on right hand side ...3733 days ago
Perl one-liner for bioinformatician !!!
...These things include changing line spacing, numbering lines, doing c...eleting and printing certain lines, parsing logs, editing files in-p...-00 -pe '' #If there are multiple spaces, delete all leaving one(ma...total number of lines that match a patternperl -le '$n = 20; $m = 3...3656 days ago
Next generation sequencing in R or bioconductor environment
...port for many more high-level packages like GenomicRanges, Sho...f Discovery cosmo The cosmo package allows to search a set o...sed genome sequence. BSgenome packages exist for many common g...nges The GenomicRanges package provides support for imp...3652 days ago
Commercial and public next-gen-seq (NGS) software
...analysis and visualization capabilities. Can use a hybrid tem...Exonerate - Various forms of pairwise alignment (including Sm.... Requires Linux or Mac OS X. PASS - It supports Illumina, SOL...tre. Perl/Linux. SOAPdenovo - Part of the SOAP suite. See abov...3546 days ago
- ...rtant DBs and tools related with miRNA: miRNA Sequencing data analysis : http://tools.genxpro.net/omiras/ miRNApath( R based tool) : http://www.bioconductor.org/packages/release/bioc/html/miRNA...
3523 days ago
Apps for Busy Bioinformatics Researchers !!!
...encing files. This is now compatible with the new update for...encing files. This is now compatible with the new update for...amp;hl=en GeneIndex: iPhone/iPad GeneIndex quickly provides...to improve knowledge of both pathogenic and benign variants....3569 days ago
- Pathway Analysis is usually perform...ical mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set of exp...etween genes involve in multiple pathways become more clear and a....org/MicroarrayCourse/Lectures09/Pathway%20Analysis.pdf http://g...
3523 days ago
