Results for "PacBio read correction"
Top-level pages
...we can use the function read.xls from the gdata package. It reads from an Excel spreadsheet an...p;package > help(read.xls) &...nbsp;> df = readWorksheet(wk, sheet="Shee...;> mydata = read.spss(...2542 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...nt for rapid determination of read compatibility with targets) So...les of the RNA-seq paired-end reads Software (Java) https://gith...classification of metagenomic reads to known bacterial genomes using&n...bled or unassembled Illumina, PacBio, and ONT data (based on MinHash d...2424 days ago
- ...file with Sanger reads --pacbio <filename> file with PacBio reads --nanopore <...peline options: --only-error-correction runs only read error correction (without assembling) --only-...not to compress the corrected reads --disable-rr disables...
2404 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all c...teps in RNA-seq data analysis, including experimental design, quality control, read align...
2403 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outp...not have a consensus step. It simply concatenates pieces of read seque...2383 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once,...ns an exact repeat somewhere, reads mapping to it will be mapped...you want to determine whether reads are mouse or human, it does..., either quantifying how many reads go to each reference, or spl...2367 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but a...ts. But sometime, we need publication ready figure of genomes. Following...sp; Java Visual Mapping tool for NGS reads http://www.springer.com/cda...cViewer Visualization of short read align...2336 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used to...umber between 0 and 7. 7 — full permissions 6 — read and write only 5 — read and e...2333 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structur...The working of Awk is as followsAwk reads the input files one line at...as follows: BEGIN { Actions before reading the file}{Actions for ever...r file in addition to the one you are reading, f...2332 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Ac...axonomy/term/131 De novo long-read assembly of a complex animal...TULIP - The Uncorrected Long read Itegration Pipeline https://...apping of nanopore sequencing reads with GraphMap | Nature Commu...2294 days ago
