Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely t...2715 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args. Reg...2701 days ago
Quick next generation sequencing (NGS) terms definition
...known as read-pair signature.split reads: a read that can only be mapped to the reference genome by breaking into two sub-reads is called a split-read. These types of reads also in...2579 days ago
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Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which some...2519 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) h...2428 days ago
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Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs...2387 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a gen...2371 days ago