Comprehensive list of visualization tools for biological pathways
...ttp://jdesigner.sourceforge.net/Site/JDesigner.html KaPPA View Plant pathways http://kpv.kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.jp/kegg/ Omix Visuali...2329 days ago
2756 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...gzipped or not; no reference genome required; read pairs can be g...001 genomes project (uses ref plant- 1001genomes.org) Ouptut:...SnpEff Input: BAM Reference Genome: FASTA indexed with SAMtools...alf, CNV file -cnv Reference genome: -refgene (created in MATLAB,...2951 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In...960's scientists discovered that many genomes contain stretches of highly...been copied to another region of the genome.Interspersed RepeatsProcessed...which have been reintegrated into the genome with the assitance of a rever...2254 days ago
2911 days ago
Genome Assembly Tools and Software - PART1 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. TriMetAss 1.2 – Th...er designed to assemble virus genomes that have no repeat sequence...Phusion 2.1c – Assembly Genome Sequences from Whole Genome S...2728 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates p...d concordant if they can be mapped to the reference genome as “expected”: (a...bsp;a read that can only be mapped to the reference genome by breaking into two sub-read...2565 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor...hybridization or through lateral gene transfer. Fairly common in certain land plant...2504 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundanc...https://github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-i...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...ol for MLST directly from the genome sequencing reads Software (P...2414 days ago
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