Results for "Genome Interpretation"
Top-level pages
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, h...2363 days ago
List of visualization tools for genome alignments
Genome browsers are useful not...d publication ready figure of genomes. Following are the list of genome alignment visualization tools...on information of a reference genome http://bioinformatics.zj.cn/...d visualizing sequenced human genomes http://www.svaproject.org Viewer (...2332 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and al.../data/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...r.sourceforge.net/ REPuter http://www.genomes.de/...2322 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...f the workflow which includes Transcriptome/ Genome alignment, Differential expre...Venn diagrams, CVA, UMI support and elastic genome browser used in RNA-Seq workf...s analysis and leaves more time for end data interpretation. This webinar will give an ov...2313 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material bet...A must enter the host nucleus, integrate into the genome, and in more complex organism...tential for genetic incompatibility with the host genome and mis...899 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bio...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...2290 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing st...gle‐nucleotide variants as well as insertion/deletions variants in the human genome”2252 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-not...#[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...May 7 11:29:35 2018] Final reduction...#file name genome size co...
2239 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, f...ired reads" or "Toward almost closed genomes with GapFiller". There are a...ake a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...'t interested in assembling the full genome, just t...2214 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genome) sequen...2187 days ago
