Results for "my"
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Installing Bio::SCF perl module
...F-1.01] perl Makefile.PL []Checking if your kit is complete...Looks goodGenerating a Unix-style MakefileWriting Makefile for Bio::SCFWriting MYMETA.yml and MYMETA.jsonjitendra@jitendra-UNL...2246 days ago
- ...odejs pandoc libiodbc2-dev libmysqlclient-dev gsl-ref-psdoc |...pycurl python-pyglet python-pymysql python-pyparsing python-py...y unselected package python-pymysql.(Reading database ... 4351...e files...Setting up python-pymysql (0.7.2-1ubuntu1) ...Settin...
2218 days ago
Creating conda environment for python2.7
...e an environment: conda create --name myenv NOTE: Replace myenv with the environment...ic version of Python: conda create -n myenv python=3.4 To creat...conda create --no-default-packages -n myenv python TIP: You can...2218 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
...13 r1.fq r2.fq stampy.py -g hs37m -h hs37m -o r12.stampy.sam -M r1.fq,r2.fq soap -D hs37m.fa.index -a r1.fq -b r2.fq -l 32 -g 3 -u dummy -2 dummy -o r12.soap2210 days ago
Understanding BLASTn output format 6 !
...and subject frames separated by a '/'qframe Query framesframe Subject framebtop Blast traceback operations (BTOP)staxids Subject Taxonomy ID(s), separated by a ';'ssci...2166 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_read...2138 days ago
Parallel Processing with Perl !
...One of the oldest way to fork is my $fork = fork();if($fork){&nbs...d process to finishforeach(@childs){my $tmp=waitid($_,0);} what a...file using flock command. open (my $QUAL, “myfile.txt&rdqu...is to use pipes cat output_dir/* | my_pipe or my_pipe <(file1) f...2107 days ago
- ...the time diff , we can use it to know the time taken by some part of the code in the program. More sophisticated way: use Benchmark;sub first { my(arguments) = @_; } timethes...
2107 days ago
- ...and that there was a linux x86_64 executable for my architecture available at:&nb...PE will return the machine architecture type.On my CentOS 6 based system this ga...n the source tree. ie: mkdir lib/$MACHTYPE For my machine, lib/x86_64 already e...
2091 days ago
Frequent parameters for bioinformatics tools !
... MeDuSa -random 100 Prokka --usegenus --force --addgenes --rfam --rawproduct cmsearch (taxonomy, 16S) --rfam --noali blastn (taxonomy, 16S) -evalue 1E-10 ...1313 days ago
