Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-l...2323 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their imp...iscovery and TE detection: BLASTER suite http://urgi.versailles.inra.fr/development/blaster/ Censor h...2316 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-cell...892 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just a...ly, Python is great for backend web deve...me/why-learn-python and http://bioinformaticsonline.com/discussion/view/...x & 3.1 - 3.x) Test-Driven Web Development with Python (3.3 - 3.x)...2297 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Re...ultiple sequence alignments | Bioinformatics | Oxford Academic https://ac...s of genome annotations | BMC Bioinformat...2283 days ago
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Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions,...2244 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a d...w.baseclear.com/landingpages/basetools-a-wide-range-of-bioi...e is a useful explanation of several tools. https://bioinformat...2207 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexibl...n which are widely used in the big data, NGS, and bioi...hich makes it a perfect fit for rapid application development. Python is interpreted lan...2225 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fa...2152 days ago