Results for "PA"

Top-level pages

  • Cheatsheet for Linux !!

    ...sp;   less file — view file with page navigation   ...age    du — show directory space usage    fre...d your key to host for user to enable a keyed or passwordless login  &n...

    2902 days ago

  • Tool: Gene Set Clustering based on Functional annotation (GeneSCF)

    ...V1.1. Examples to download database as simple text file using GeneSCF "prepare_database" module, 1) https:...tiple gene list simultaneously.   ------------   Home page:http://genescf.kandurilab.o...

    2899 days ago

  • NGS Glossary !!

    ...g VCF data. CIGAR String: Compact Idiosyncratic Gapped Alignm...dicates that the first 5 base pairs of the read align to the r...ous mutation of G to A. mate-pair: in paired-end sequencing,...lude: whether the read is one part of a paired-end read, wheth...

    2897 days ago

  • Genome Assembly Tools and Software - PART1 !!

    ...the assembly in a model encompaasing error rate, insert lengt...ss ones.2.Scaffolding. We use paired-end reads to connect repe...equences, using Illumina read pairs sequenced from mixed popul...eads Phusion is a software package for assembling genome se...

    2713 days ago

  • Source Code and Pseudo Code !!

    ...grade is greater than or equal to 60 Print "passed" else Print "failed...rades were entered' endif 4. initialize passes to zero initialize failu...dent. Case...EndCase; If...Endif; Call ... with (parameters); Call; Return ....;...

    2686 days ago

  • Perl Special Vars Quick Reference

    ...variable. @_ Subroutine parameters. $a$b sort comparison routine variables.... modifier. $+ Last paren match. $^N Last clos...${^OPEN} Internal use: \0 separated Input / Output layer inf...nfo $] Old: Version and patch number of perl interpreter...

    2672 days ago

  • Quick next generation sequencing (NGS) terms definition

    ...the Illumina WGS protocol generates paired-end reads from both ends...variants, mapping locations of the paired ends span within an inter...;min,δmax]. Most (>90%) of paired-end reads are sampled fro...sp;briefly, any non-concordant read pair is considered discordant. N...

    2550 days ago

  • Awesome perl frameworks, libraries and software - PART 1

    ...nt simple HTTP servers. andk/pause - Perl authors upload...cher/MultiMarkdown-CMS - Package to assist with publishin...image) duckduckgo/p5-app-duckpan - DuckDuckHack OpenSour...er Order Perl modules on the CPAN noxxi/p5-io-socket-ssl ...

    2517 days ago

  • Import R Data

    ...p;# load gdata package > help(read...;from the XLConnect package to read the entire workb...so from the foreign package. There is a "to.dat...00,a3,b3 After we copy and paste the data above in a file n...

    2517 days ago

  • Phylogenetic & Molecular Genetics Terms and Definitions

    ...the terminal points of the cladogram. expressed sequence tag (EST) -- A partial coding sequence isolated...ous line of descent; any series of organisms connected by reproduction by parent of offspring. monophylet...

    2490 days ago