Results for "genome structure"
Top-level pages
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bio...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...2269 days ago
Tools to Predict the Impact of Missense Variants !
...2)“Predicts possible impact of an amino acid substitution on the structure and function of a human pr...cleotide variants as well as insertion/deletions variants in the human genome”2231 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) ha...interacting sites by homology modeling of complex structures HotPOINT Prediction of pro...on of DNA-protein interactions DISPLAR Given the structure of a protein known to bind DN...2230 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using dockin...es. Following are the tools to predict the structure of protein–protein comp...earch: Monte Carlo with low and high resolution structure representation levels Differ...2230 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-note...##[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...May 7 11:29:35 2018] Final reduction...#file name genome si...
2218 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, f...ired reads" or "Toward almost closed genomes with GapFiller". There are a...ake a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...'t interested in assembling the full genome, j...2193 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also...p; BEAST is the best way to predict the ancestral structure. but, I suggest following ste...x.php/Download" 4.5- Path-o-Gen (temporal structure of a tree input file -> ar...2207 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genome) s...2166 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extens...tp://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample...r.ac.uk/resources/software/margarita) MaCH http://genome.sp...2124 days ago
Bioinformatics in Africa:- Part 1
The Institut Pasteur de Côte d’Ivoire was created by the N°72511 l...training in bioinformatics and genome data analysis. Sho...7 a yearly regional course of initiation and using genome da...1218 days ago
