Results for "CA"
Top-level pages
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...patibility with the host genome and mismatch between the niche of the donor and the host. Over the longer term, foreign DNA may become “domesticated” in the recipient ge...901 days ago
Python learning resources for bioinformatics and computational biologist !
...al-purpose language, which means it can be used to build just about...t Biopython (PDF) Build applications in Python the antitextbo...a Pythonista: Idiomatic Python CodeCademy Python Composing Program...weigart (2.7) Modeling Creativity: Case Studies in Python - To...2306 days ago
Some useful Bioinformatics links
...ds | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/a...://broadinstitute.github.io/picard/command-line-overview.html...gn | Bioinformatics | Oxford Academic https://academic.oup.co...h3/minimap2 SSPACE-LongRead: scaffolding bacterial draft genom...2292 days ago
- ...ased on their list in a text file: cat file_list.txt | while read l...done To keep only one copy of duplicated lines: awk '!seen[$0]++'....gz files in your current folder: zcat *.gz | echo $((`wc -l`/4))...ultifasta file (e.g. from assembly scaffolds.fasta file here): awk...
2268 days ago
Installing Bio::SCF perl module
...IDDEN -c -o gzwrite.o gzwrite.car rc libz.a adler32.o crc32.o...rd for jitendra: rm -f /usr/local/lib/libz.acp libz.a /usr/loc.../exp_file -I../utils -I/usr/local/include -fPIC -MT scf_extras.../exp_file -I../utils -I/usr/local/include -fPIC -MT traceType....2269 days ago
Tools to Predict the Impact of Missense Variants !
...the wealth of these methods, an important practical question to answer is which...on of a human protein using straightforward physical and comparative consideratio...he element were neutral DNA, but did not occur because the element has been under...2254 days ago
Binding Site Prediction in Protein !
...is fundamental to all biological functions. In this section we include tools that can assist in prediction of inte...s (docking). Pockets Identification CASTp Automatic Identif...inding site by pocket identification using the Connolly surfac...2253 days ago
Protein-Protein Interaction Sites Predictions !
...logy, medicine and the pharmaceutical industry. PPIs can be investigated from two asp...the understanding of many biological and clinical observations.&n...protein interfaces using an empirical model ISIS Prediction of i...patches on protein surfaces which can be indicative of nucleic aci...2253 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“lig...re, focusing on free (at least for academic institutes) and/or popul...ly flexible targetHiTS_Score (empirical) FlexX Systematic (IC)Flex...e targetGoldScore, ChemScore (empirical), ASP (knowledge based) ICM...2253 days ago
Tools for Protein-Protein Docking !
...multiple filters HEX Global rigid search: Fourier correlation of spherical harmonics Shape complementa...Filtering based on external data. ICM Global rigid search: Monte CarloEmpirical scoring function...2253 days ago
