Results for "NT"

Top-level pages

  • Awk for Bioinformatician and computational biologist

    ...l be performed.In the above syntax, either search pattern or a...a.tsv with the following contents: $ cat data/test.tsvcontig1...TGTGTGTGcontig2,ACTTTATATATTcontig3,ACTTATATATATATAcontig4,ACT...nt "";next}{printf $1"\t"}{print $1}' data/test.tsvcontig1 con...

    2321 days ago

  • Computational resources for TE discovery and TE detection

    ...sembly, annotation and alignment has generated increasing interest in developing new method...i.versailles.inra.fr/development/blaster/  Censor h...r http://www.eecs.wsu.edu/~ananth/software.htm MAK http://we....html TE nest http://www.plantgdb.org/prj/TE_nest/TE_nest.ht...

    2315 days ago

  • Webinar on RNA-Seq Data Analysis on 28 Feb 2018

    ...to analyze their data using a very intuitive workflow for the analys...cludes Transcriptome/ Genome alignment, Differential expression anal...so supports novel discovery like identification of novel genes, exon...and leaves more time for end data interpretation. This webinar will...

    2305 days ago

  • Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes

    Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms&r...es to gain a gene by HGT, foreign DNA must enter the host nucleus, integrate...ome, and in more complex organisms it must enter the sequestered germline in...

    891 days ago

  • Python learning resources for bioinformatics and computational biologist !

    ...reat for backend web development, data analysis, artificial intelligence, and scientific comp...d applications in Python the antitextbook (3.x) (HTML, PD...to Think Like a Computer Scientist: Learning with Python, Int...iled from StackOverflow documentation (3.x) Python Practice B...

    2296 days ago

  • Some useful Bioinformatics links

    ...free prediction of rearrangement breakpoint reads | Bioinformatics | Oxfo...nopore sequencing reads | Scientific Reports https://www.natu...e optimization platform for synthetic gene design | Bioinforma...s://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-...

    2283 days ago

  • Bioinformatics OneLiner

    ...awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next...e"; done To split bam files into sets with mapped and unmappe...m assembly size from SPAdes contigs.fasta or scaffolds.fasta f...$1)}' | sort | uniq -c To deinterleave interleaved fastq file...

    2258 days ago

  • Installing Bio::SCF perl module

    ...ecking whether to use vs[n]printf() or s[n]printf()... using v...ecking whether build environment is sane... yeschecking for ga...r/local/include -fPIC -MT fpoint.o -MD -MP -MF ".deps/fpoint.T...‘int’, but argument 3 has type ‘long int&rs...

    2259 days ago

  • Tools to Predict the Impact of Missense Variants !

    Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studies for explor...considerations” MutationTaster‐2 (MT2)“Evaluation...n P values based on an alignment and a model of neutral evolut...

    2244 days ago

  • Binding Site Prediction in Protein !

    The interaction between proteins and other molecules is fundamental to all biological functions...dicting the structure of the intermolecular complex formed bet...Pocket-Finder Automatic identification of pockets and cavit...rved due to structural restraints from those due to functional...

    2243 days ago