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Python learning resources for bioinformatics and computational biologist !
...ing Python - Cody Jackson (PDF) Learning Python - Fabrizio Romano, Packt. (Just fill the f...om D. De Smedt (PDF) Natural Language Processing with Python (3.x) Non-Programmer's Tutorial for Py...2310 days ago
- ...N.................any base . or -............gap Protein: Amino Acid Code: Three letter Code: Amino Acid: ---------------- -----...........Tryptophan X.................Xaa.................Any amino acid Y.................Tyr.....
2300 days ago
Some useful Bioinformatics links
...//github.com/GATB/DiscoSnp De novo assembly | Oxford Nanopore...AjWel9jnR3ZoTv0P7E7t-wVGo30iojNO7dICajNY_7PE5xVPv6OoLe7hn9TeUj...html Omega | Overlap-graph de novo Assembler for Metagenomics...du/~langmea/resources/lecture_notes/assembly_olc.pdf SAM and B...2296 days ago
- ...k '/^>/ {OUT=substr($0,2) ".fa"}; {print >> OUT; close(OUT)}' Input_File To convert Illumina FASTQ 1.3 to 1.8: sed -e '4~4y/@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\\]^_`abcdefghi/!"...
2272 days ago
Installing Bio::SCF perl module
...cal/include/zconf.h 2. Now make io_lib-1.9 In order to...her we are cross compiling... nochecking for suffix of executa....o mFILE.o ar: `u' modifier ignored since `D' is the default (...erl/5.22/CORE/embed.h:402:40: note: in definition of macro &ls...2273 days ago
Tools to Predict the Impact of Missense Variants !
...ter‐2, MutationAssessor, Combined Annotation Dependent Depletion, LR...e evaluations of predictors that do not address these types of circu...redicts the functional impact of amino acid substitutions in protein...of pathogenic variantsh Combined Annotation Dependent Depletion (CA...2258 days ago
Binding Site Prediction in Protein !
...hreading-based method for ligand-binding site prediction and functional annotation based on binding-site s... Prediction of binding site by pocket identification using the Connolly surface and degree of cons...2257 days ago
Protein-Protein Interaction Sites Predictions !
...action partners of a specific protein and the amino acid residues participating i...metal binding sites in proteins DBD-Hunter A knowledge-based method for the pr...Predicts DNA binding proteins for proteins with known 3D structure. PFplus A to...2257 days ago
Ligand Docking Tools and Software !
...gand and partially flexible targetGoldScore, ChemScore (empirical), ASP (knowledge based) ICM Stochastic...Systematic (IC/MA)Flexible ligandHammerhead based (empirical) Point to note: Several studies have show...2257 days ago
Tools for Protein-Protein Docking !
...DOT Global rigid search: FFTShape complementarity, electrostatics and VDWNone Escher NG Global rigid se.... Energy minimization and re-scoringFree for academics Point to note: The proper treatment of f...2257 days ago
