Results for "NT"
Top-level pages
Protein-Protein Interaction Sites Predictions !
...igated from two aspects: The interaction partners of a specifi...tion about a protein’s interaction partners allows scien...redictions: Protein-Protein Interaction Sites PPISP A conse...UP, and Promate ODA Identification of optimal surface p...2249 days ago
Ligand Docking Tools and Software !
...molecule (“ligand”) is being docked into much larger macromolecule ("...5 (force field) eHITS Systematic (RBD of fragments followed by reconstruction)F...OCK Stochastic (MC) RigidBAPPL (empirical) PLANTS Stochastic (ACO)Flexible li...2249 days ago
Tools for Protein-Protein Docking !
...igid search: FFTShape complementarity and electrostatics Re-s...ch in ensamble Shape complementarity and Lennard–Jones...r soft docking Shape complementarity and Lennard-Jones potent...igid search: FFTShape complementarity, desolvation energy, and...2249 days ago
- ...bjs-underscore libsz2 python-antlr python-bs4 python-chardet p...B]Get:18 http://be.archive.ubuntu.com/ubuntu xenial/main amd64...B]Get:72 http://be.archive.ubuntu.com/ubuntu xenial/universe a...iggers for libc-bin (2.23-0ubuntu10) ...Processing triggers fo...
2237 days ago
Creating conda environment for python2.7
TIP: By default, environments are installed into the envs directory...s. To create an environment: conda create --name mye...l all the programs that you want in this environment at the sa...e## To activate this environment, use:# > source activate p...2237 days ago
Learning Python Programming - a bioinformatician perspective !
...easy to use. One of the most important features of python is its ric...ng and analytics tasks. In the current era of big biological data, p...ramming. Python has a couple of points to recommend it to biologist...l, following are some of the important features of python which make...2230 days ago
Convert VCF to tab-deilimited table
Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \...2229 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&a...2229 days ago
Ancestral sequence reconstruction steps !
...ution. The method consists of the synthesis of an ancestral gen...p;Steven A. Benner, showing the potential of this technique –...eater variety of and much more ancient genes. Over the last dec...tion 4.1- Phi-test, implemented in SplitTree4"http://www.sp...2226 days ago
Gap filling or Contigs extensions tools !
...oftware from the DeRisi lab. Its meant to do something very similar....ools (http://www.hgsc.bcm.tmc.edu/content/bcm-hgsc-software), and SC...marks&offset=0&search_type=entities I could be wrong, but...sequencing depth for the region of interest exceeds 25 or so without...2212 days ago
