Results for "pe"
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Creating conda environment for python2.7
...conda asks you to proceed, type y: proceed ([y]/n)?...y using, because you did not specify a version. To create an...ogram at a time can lead to dependency conflicts. To automati...tools-39.1.0 | py27_0 582 KB openssl-1.0.2o | h20670df_0 3.4 M...2246 days ago
Learning Python Programming - a bioinformatician perspective !
...a general purpose programming language that is open source, flexible, powerful a...ts to recommend it to biologists and scientists specifically: It's widely used...he important features of python which makes it a perfect fit for rapid applicatio...2239 days ago
Convert VCF to tab-deilimited table
Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -...2238 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
...1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2....2238 days ago
Ancestral sequence reconstruction steps !
...g and synthesis techniques, the method was developed further in the early 2000s t...decade, ancestral protein resurrection has developed as a strategy to reveal the...this may to influence the grouping of clades, I perform with ---recombination...2235 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina shor...like GAPresolution that can help to perform local re-assemblies usin...software, it is useful only in some specific situations. Take a lo...om/search?q=scaffolding&entity_type=object&entity_subtype=boo...2221 days ago
LINKS scaffolder bloomfilter setting !
...xx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread...xx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread...th to long sequence reads or MPET pairs [see below] (Multi-FAS...and -s. ERROR fixed perl: symbol lookup error: /home...2207 days ago
Understanding BLASTn output format 6 !
...d sseqid pident length mismatch gapopen qstart qend sstart send eval...me) sequence id 3. pident percentage of identical matches...t in subject 11. evalue expect value 12. bitscore...part of subject sequenceevalue Expect valuebitscore Bit scoresco...2195 days ago
Interview Puzzles for Bioinformatician !
...One Bulb with 3 Switches Find the minimum number of aircraft Burning ropes to measure time Connect 3 h...urvivor Free the prisoners puzzle GREAT STRATEGY CAN ONLY SAVE LIFE Specially for Microsoft Interview...2176 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluat...issue. So as far as I'm concerned, you can close this issue (or keep it open if you still want to impleme...2167 days ago
