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LINKS scaffolder bloomfilter setting !
...master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -rwxrwxrwx 1 urbe urbe 65141 Jun 1...r) ✗ g++ -c BloomFilter_wrap.cxx -I/home/urbe/anaconda3/lib/p...G MPET. WHEN SET, LINKS WILL EXPECT A SPECIAL FORMAT UNDER -s...t memory allocation errors) -x Turn off Bloom filter functi...2179 days ago
Understanding BLASTn output format 6 !
...BLASTn maps DNA against DNA, for example gene sequences against a...ent in subject 11. evalue expect value 12. bitscor...y adding the option -outfmt, as for example: -outfmt "6 qseqid sse... Blast traceback operations (BTOP)staxids Subject Taxonomy ID(s),...2167 days ago
Interview Puzzles for Bioinformatician !
...s a list of Top 25 puzzles which have been asked in top Tech Interview. 2 Eggs and 100 Floor Classic Puzzle Five pirates and gold coin Puzzle Six pirates and Gold Coin puzzle...2147 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evalua...C -T -r nucmer.delta This reports Racon's changes in a table. You can exclude indels with the -I&...2138 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studi...P2 http://soap.genomics.org.cn/index.html Single-sample High-qual...p://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolk...2124 days ago
Parallel Processing with Perl !
...s,$fork); }elseif($fork==0){your code here;exit(0);}else{die “Couldnt...). Simple usage:use Parallel::ForkManager;my $max_processors=8;my $fork= new Pa...ours(about 2-3 hrs for 100GB file)You can use unix “split” command f...2108 days ago
- ...r multicore processor it is becoming a neccesity to know about the CPU time taken by our perl program. This is the simple way to use the module Example1: use Benchmark; $firs...
2108 days ago
- ...nbsp;http://hgdownload.cse.ucsc.edu/admin/exe/ and that there was a linux x86_64 executable for my arch...copied the blatSrc35.zip file into that.Next I used unzip blatSrc35.zip...e the correct short form of the MACHTYPE: x86_64 now create the director...
2091 days ago
Bioinformatics Training Courses At RASA LSI
...ker. The trainings are crafted meticulously, covering different modules of courses such as Bioinformatics course, In silico Drug Discovery course, Next Generation Sequence data ana...1670 days ago
Bioinformatics Services / CRO Services
...earch & Development services in life science informatics field like Next Generation Sequencing (NGS)...rch and industry. We provide our customers with A seamless model of wide expertise and comprehensive plat...1670 days ago
