3978 days ago
List of bioinformatics open source projects/software.
...e given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden Package Sequence ass...3787 days ago
List of In-silico Binding Site Prediction Tools
...detected by geometric hashing (Brakoulias and Jackson 2004). Multiple alignments, structural superpositions an...protein domain-domain interaction information from 3DID and sequence alignments from PFAM together with struc...3775 days ago
Next generation sequencing in R or bioconductor environment
...defines three major data containers - GRanges, GRangesList and GappedAlignments - which are supporting other...genomic intervals as well as more specialized containers for storing alignments against a reference genome. T...3655 days ago
Commercial and public next-gen-seq (NGS) software
...m to find semiglobal non-gapped alignments based on k-mer seeds. http://...leotide Databases. Whole genome alignments to a reference genome. Writte...y finely the sensitivity of the alignments. Spaced seed intial filter, t...tool for analyzing cross_match alignments. Developed by Rene Warren and...3550 days ago
Software packages for next gen sequence analysis
...leotide Databases. Whole genome alignments to a reference genome. Writte...tool designed for accurate read alignments. It quickly aligns millions o...y finely the sensitivity of the alignments. Spaced seed intial filter, t...tool for analyzing cross_match alignments. Developed by Rene Warren and...3273 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s Input: BAM (aligned in SAMtools API) Output: VCF Indelocator Description: (Broad Institute): does not perform realignment, relies on alignments in BAM files (BAM files need...2939 days ago
2900 days ago
Genome Assembly Tools and Software - PART1 !!
...formance graphical viewer for next generation sequence assemblies and alignments.Supporting a range of input a...n RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of tr...2716 days ago
List of visualization tools for genome alignments
...ence genome http://bioinformatics.zj.cn/magicviewer/ MapView Alignments of huge-scale single-end and...ads http://omictools.com/mapview-s1367.html MultiPipMaker Computes alignments of similar regions in two DNA...2314 days ago