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Best book Titles for Learning Bionformatics
...l Tyndale (Editors), 2001, Marcel Dekker Pharmacogenetics and Pharmcogenomics: Recent Conceptual and Technical Advances (Pharmacology, Volume 61, Number 3, 2000), Elliot S. Vesell (E...3949 days ago
Most Commonly used Awk by Bioinformatician
...join two files on column 1: awk 'BEGIN{while((getline<"file1.txt")>0)l[$1]=$0}$1 in l{print $0"\t"l[$1]}' file2.txt > output.txt count number of occurrence of column 2 (un...3944 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...arge genomic regions under various demographic models http://cmpg.unibe.ch/software/simcoal2/SimCopy An R package simulating the evolution of copy number profiles along a tree. http:/...3768 days ago
Perl one-liner for bioinformatician !!!
...l. These things include changing line spacing, numbering lines, doing calculations,...consecutive blank linesperl -pe '$_ = "$. $_"'#Number all lines in a fileperl -pe '...t scalar(grep{/./}<>)' #prints the total number of non-empty lines in a filep...3659 days ago
Next generation sequencing in R or bioconductor environment
...eloped for detecting transcription factor (TF) binding sites in a large number of enriched regions from high...c feature ranges, such as exons or genes. This way one can quantify the number of reads aligning to annotate...3656 days ago
Commercial and public next-gen-seq (NGS) software
...Exon, miRNA Expression, Copy Number, Allele-Specific Copy Number, LOH, Association, Trio Analy...aterman algorithm. Features a number of support tools. Support for...A or NCBI genome builds for a number of organisms. Web Portal. OS..., a new method to detect copy number variation using high-throughp...3550 days ago
Apps for Busy Bioinformatics Researchers !!!
...cell lines can be queried for mutations. Copy Number Variation (CNV) plots from ce...quencing data including small variations, copy number variations (CNVs), and loss o...unique identifier key. This key, called the GeNumber, will embed the uniqueness of...3573 days ago