Results for "PacBio RSII"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since...y from long gapless reads, like those produced by SMRT sequencing technologies (PacB...2727 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignm...y with error-containing long sequence (e.g., ONT or PacBio reads, draft genomes) Softwa...tification using assembled or unassembled Illumina, PacB...2413 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - S...9) --sanger <filename> file with Sanger reads --pacbio <filename> file with PacB...
2393 days ago
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLUMINACLIP:...:2:30:1...85 --min_window_q 65 FastQ Screen --aligner bowtie2' (bwa for PacBio) --subset 1000 (for PacB...1327 days ago
- Short Read Simulators With the popularity of next-generation sequencing (NGS) technolog...ain TGS technologies; (1) Pacific Biosciences (PacBio) and (2) Oxford Nan...low are some of the popular and recently introduced PacB...
625 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a...data from multiple sequencing technologies, such as Illumina and PacBio. Canu: A long-read assembler optimized for PacB...328 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the m...ncing data. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacB...284 days ago
