Results for "assemblies."
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...al, PNAS 108(4): 1513-18, 2011 PubMedCentral Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies. Florea et al., PLoS One...3823 days ago
Commercial and public next-gen-seq (NGS) software
...form that retains ambiguities, such as those arising from polymorphism, thereby providing information that has been absent from previous genome assemblies. Broad Institute. Edena - Eden...3563 days ago
Software packages for next gen sequence analysis
...form that retains ambiguities, such as those arising from polymorphism, thereby providing information that has been absent from previous genome assemblies. Broad Institute. * Edena - Ed...3286 days ago
Genome Assembly Tools and Software - PART1 !!
...ies QUAST evaluates genome assemblies.QUAST works both with and with...ty assessment of de novo genome assemblies. Specifically it facilitates r...either RNA-seq or DNA-seq SOLiD assemblies. Bandage v0.7.1 –...ndash; Improving Newbler Genome Assemblies. Gap Resolution was developed...2730 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours...2376 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Refere...2285 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Towar...2209 days ago
