Results for "expressed"
Top-level pages
...moment. The most popular greedy algorithm is finding the minimal spanning tree as given by Kruskal. Linear programming The problem is expressed as a set of linear inequaliti...3982 days ago
Phylogenetic for Bioinformatics
...f the structure of molecules to gain information on an organism's evolutionary relationships. The result of a molecular phylogenetic analysis is expressed in a so-called phylogenetic t...3982 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...islands are often located around the promoters of housekeeping genes (which are essential for general cell functions) or other genes frequently expressed in a cell. At these locations...3860 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...s to differential expression results. Oshlack et al, Genome Biol 11(12):220, 2010 Full Text DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Wang...3815 days ago
List of In-silico Binding Site Prediction Tools
...based alignments of these proteins with the query. Structural similarity scores are calculated for the query protein's surface residues, and are expressed as different colors on the qu...3779 days ago
Next generation sequencing in R or bioconductor environment
...th DESeq The DESeq package contains functions to call differentially expressed genes (DEGs) in count tables...ts based on the negative binomial distribution to call differentially expressed genes (DEGs) in count data.&n...3660 days ago
- ...eveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set of expressed genes follow but also to disc...
3531 days ago
- ...machines. genotype likelihood: the probability that a specific genotype is present in the sample of interest. Genotype likelihoods are usually expressed as a Phred-scaled probability...
2904 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...ideration. The points at which lineages split represent ancestor taxa to the descendant taxa appearing at the terminal points of the cladogram. expressed sequence tag (EST) -- A parti...2497 days ago
