CovCal: Coverage / Read Count Calculator
...milar calculator written by James Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Num...2193 days ago
2844 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...at has been aligned in BWA and Samtools Output: BCF that can be formatted to VCF using bcftools Snippy Description: finds indels between haploid reference genome and NGS sequ...2935 days ago
Genome Assembly Tools and Software - PART1 !!
...eep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia stipitis. C...2712 days ago
955 days ago
Bash script to simulate a genome !
...midlength=20000 maxlength=100000 \ out=/dev/null # make 60x haploid coverage for Illumina reads...w-reads.log | grep -Po "\d+"` echo "best k=${k}" # make 30x haploid coverage for PacBio CLR reads...945 days ago
2126 days ago