Results for "map"
Top-level pages
Best book Titles for Learning Bionformatics
...Kremer, 1995, Walter De Gruyter Introduction to Computational Biology - Maps, sequences and genomes, Mich...e Genomics - Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution o...3971 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ry preparation facilitates improved mapping and assembly of GC-biased...ware tools The Sequence Alignment/Map format and SAMtools. Li et al...ene expression estimation with read mapping uncertainty. Li et al, Bi...ing for rapid and efficient genetic mapping. Andolfatto et al. Genome...3833 days ago
List of bioinformatics open source projects/software.
...al.ca/GenGIS/Main_Page Application that allows users to combine digital map data with information about b...e R/Bioconductor package for omics data analysis using a supra-hexagonal map Taverna workbench Tool for...3810 days ago
List of In-silico Binding Site Prediction Tools
...y web site (http://compbio.cs.princeton.edu/concavit​y/). MultiBind and MAPPIS: http://bioinfo3d.cs.tau.a...e shared physico-chemical binding site properties. The second webserver, MAPPIS (http://bioinfo3d.cs.tau.a...3797 days ago
Perl one-liner for bioinformatician !!!
...@F; END { print $t}' #Find total number of words in the fileperl -alne 'map { /regex/ && $t++ } @...ulate lcd of 20 and 35.perl -le '$n=10; $min=5; $max=15; $, = " "; print map { int(rand($max-$min))+$min }...3681 days ago
Commercial and public next-gen-seq (NGS) software
...a), parse caf, ace and bowtie map files, clean and filter conti...Genentec. C/Perl for Unix. gnumap - The Genomic Next-generation...om - ZOOM (Zillions Of Oligos Mapped) is designed to map millio...pensates for variation in the mappability of sequences across t...3572 days ago
Software packages for next gen sequence analysis
...SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for...ney from EMBL. C for POSIX. * GenomeMapper - GenomeMapper is a short...rFAST & mrsFAST are designed to map short reads generated with th...ariation. From the Sanger Centre. * MapView - MapView: visualization...3296 days ago
Comprehensive list of visualization tools for biological pathways
...://epe.sourceforge.net/SourceForge/EPE.html GenMAPP Visualization of gene expression and other genomic data on maps representing biological path...t data http://www.g-language.org/data/marray/ MapMan User-driven tool th...2340 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...AP, Isaac 2, SHRiMP 2, STAR, TMAP, TopHat and TopHat 2) Applic...Links to 1000 Genomes and HapMap downloads Output: FreeB...onfiguration file, Data file, Map file (includes rsID) Output:...in one interval of a genetic map), linkmap (calculates locatio...2962 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. The mapping occurs because the sequen...ng quality of base calls, quality of mappings, and probabilities assoc...sequencer-ready library. Alignment Mapping of sequence reads to a kn...
2922 days ago
