2510 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver,...2381 days ago
DendroPy: a Python library for phylogenetic computing
...netic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, Phylip, FASTA, etc. Application scri...2245 days ago
Bio++ : C Language libraries for your biological need
...ort for alignments.Various I/O formats supported: Fasta, Mase, CLustal, Phylip, DCSE, GenBank (sequence only...ethods Parsimony (NNI)Distance matrices estimation and I/O to files in Phylip format.Distance methods: (U/W...3989 days ago
Phylogenetic for Bioinformatics
...ac.uk/tutorials/phylogeny/TUTORIAL: PHYLOGENETIC ANALYSIS USING PARSIMONY:http://home.cc.umanitoba.ca/~psgendb/GDE/phylogeny/parsimony/phylip.parsimony.html PHYLIP: http://www.umanitoba.ca...3988 days ago
1483 days ago