Illumina based assembly pipeline steps !
...variant screenshots with annotation tracks (ASCIIGenome) Intersect variants across callers (BCFTools) De novo assembly Primer trimming (Cutadapt; amplicon data only) Choice...920 days ago
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Comment on "Software packages for next gen sequence analysis"
Thanks for the useful list. I found this CUTADAPT useful. It searches for the adapter in all reads and removes it when it finds it.http://cutadapt.readthedocs.org/en/stable/guide.html3109 days ago