Results for "overlaps"
Bio-Scripts
#!/usr/bin/perl use strict; use warnings; #For normal overlaps my ($lower, $upper) = (40, 100); f...and $upper\n", $is_between ? "" : " not"; } #For range to range overlaps #!/usr/bin/perl use stric...2686 days ago
Insert the sequence at desire location in multi-fasta file with Perl
...llowing format --- Keep the coordinate sorted by name+location #GenomechrName locationStart AlienGene AlienLength # The coordinate should not overlaps --- next postition shold be b...2364 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2175 days ago
Perl script to split fasta sequence / overlaps
#!/usr/bin/perl use strict; use warnings; my $len = 5000; my $over = 200; my $seq_id=$ARGV[0]; my $seqFile = $ARGV[1]; my $seq; open(my $fh, "2093 days ago
Perl script to split fasta sequence and create overlaps
#!/usr/bin/perl use strict; use warnings; my $len = 5000; my $over = 200; my $seq_id=$ARGV[0]; my $seqFile = $ARGV[1]; my $seq; open(my $fh, "2022 days ago
- ...GTCCTGAACA GAGCTGATCA TCTTTCAGAT AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing errors HINT: Overlaps are at least of length 5...
1265 days ago
Raku script to find overlaps between two bed files !
...my @fields1 = $line1.split("\t"); my $chr1 = @fields1[0]; my $start1 = @fields1[1]; my $end1 = @fields1[2]; # Check for overlaps with intervals in the second...144 days ago
Perl script to find overlaps between two bed files !
#!/usr/bin/perl use strict; use warnings; # Check if the correct number of arguments are provided if (@ARGV != 2) { die "Usage: $0 file1.bed file2.bed\n"; } # Read the contents of the two BED files my $file1 = shift @ARGV; my $file2 = shift @ARGV; open my $fh1, '144 days ago
