Count the frequency of base G in a given DNA sequence
...h = length($DNA); #for each letter in the sequence check if it is the base G #if 'yes' increment $countG while($currentPos < $DNAlength){ my $base = substr($DNA,$currentPos,1);...2965 days ago
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...//g; @DNA = split( '', $DNA ); $count_of_A = 0; $count_of_C = 0; $count_of_G = 0; $count_of_T = 0; $errors = 0; foreach $base (@DNA) { if ( $base eq 'a' ) { ++$count...2964 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...ps://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ide...unselected package gconf2-common. (Reading database ... 194272 files and director....1) ... #Now you can add packages in it (base) bioqueen@bioqueen-Lenovo-ide...1224 days ago
2742 days ago
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutate.sh in= mutant15CH101.fasta out=mutant153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.fasta out...1784 days ago
Estimate Genome Size with Jellyfish and R
...e k-mer #-s -size=unit32 Hash size / memory allocation #-o -output=string Output file name #--min-quality-char Base quality value. Version 2.2.3...2294 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda...r36hcdcec82_2 77 KB conda-forge r-base-3.6.0 | h...orge/linux-64::r-backports-1.1.6-r36hcdcec82_2 r-base pkgs/r/linux-64::...1501 days ago
2175 days ago
Installing Porechop on Ubuntu !
...he reads - if auto, the format will be chosen based on the output filename or th...efault: 16) Barcode binning settings: Control the binning of reads based on barcodes (i.e. barcode...2154 days ago
2124 days ago