Results for "Gene Expression Analysis"
Bio-Scripts
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO;...> ">$ARGV[2].cdna.fasta" ); my $outfile_gene = Bio::SeqIO->new( -format => 'fasta', -file => ">$ARGV[2].gene.fasta...as the stop codon) # gene - the entire gene seq...2178 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and...mean do "./lib/Parrot/Config/Generated.pm"? at Configure.pl lin....done. auto::cpu - Generate CPU specific stuff..........:coverage - Are coverage analysis t.....yes. auto::platform - Generate a list of platform object fil...1577 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...mbly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2163 days ago
- ...het sites for allele specific expression CollectAllelicCounts...Picard) Generate index statistics from a BAM f...ools that perform metagenomic analysis, e.g. microbial community com...r Generates recalibration table for Base...
2115 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ----------------------...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...2074 days ago
Setting up falconUnzip conda environments for genome assembly !
...$ conda deactivate ➜ Analysis_Results source activate denovo_asm (denovo_asm) ➜ Analysis_Results conda install pb-asse...e currently available SMRT(R) Analysis builds. While # # efforts ha...e currently available SMRT(R) Analysis builds. While # # efforts ha...2029 days ago
- $ sudo apt install npm Reading package lists... Done Building depend...e node-spdx-correct node-spdx-expression-parse node-spdx-license-ids n...e node-spdx-correct node-spdx-expression-parse node-spdx-license-ids n...onic/universe amd64 node-spdx-expression-parse all 1.0.4-1 [12.1 kB]...
1593 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335...ived from highly‐expressed A. gambiae genes is appended below. Biote...e reveals that about sixty percent of genes are...ative field that involves the design, analysis, and interpretation of data f...1551 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE...tation - autoConTAMPR: Automatic Contingency Table Analysis o...p Profile: default Kernel Version: 4.15.0-88-generic Operating System: Ubuntu 18....
1549 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified...INARY/ 03/07/2020, 07:49:00 GENE_INFO/ 03/07/2020, 07:48:00...15.1 kB 30/06/2020, 23:01:00 expression/ 06/03/2017, 05:30:00...ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm...z ftp://ftp.ncbi.nlm.nih.gov/gene/DAT...1442 days ago
