Results for "GitHub"

Bio-Scripts

  • Install HTSLIB on Ubuntu !

    ...018-10-25 13:36:41-- https://github.com/samtools/htslib/releases/...htslib-1.9.tar.bz2 Resolving github.com (github.com)... 192.30.25...302 Found Location: https://github-production-release-asset-2e65...018-10-25 13:36:41-- https://github-production-release-asset-2e65...

    2047 days ago

  • Installing Platypus on Ubuntu !

    (py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypus.git Cloning into 'Platypus'... remote: Enumerating objects: 1394, done. remote:...

    2047 days ago

  • Setting up falconUnzip conda environments for genome assembly !

    ...# # https://github.com/PacificBiosciences/pbbioc...# # Please see https://github.com/PacificBiosciences/pbbioc...

    2017 days ago

  • Sync github repo

    http://stackoverflow.com/questions/6373277/git-sync-local-repo-with-remote-one This makes your local repo exactly like your remote repo. Remember to replace origin...

    2009 days ago

  • Convert FASTQ to FASTQ

    # Convert FASTQ to FASTA seqtk seq -a IN.fastq > OUT.fasta # Convert FASTQ to FASTA and set bases of quality lower than 20 to N seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta # Download Seqtk https://github.com/lh3/seqtk

    1753 days ago

  • Map the long reads

    Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam

    1753 days ago

  • Install NPM !

    ...-fstream node-fstream-ignore node-github-url-from-git node-glob node-g...-fstream node-fstream-ignore node-github-url-from-git node-glob node-g...ubuntu bionic/universe amd64 node-github-url-from-git all 1.4.0-1 [3,7...reviously unselected package node-github-url-from-git. Preparing to u...

    1581 days ago

  • Install Samtools, Bcftools and htslib on Ubuntu !

    ...esw5-dev sudo apt-get install liblzma-dev cd /usr/bin wget https://github.com/samtools/htslib/releases/...ar -vxjf htslib-1.9.tar.bz2 cd htslib-1.9 make cd .. wget https://github.com/samtools/samtools/release...

    1586 days ago

  • Install Zef for Raku !

    ...-HP-Pro-3335-MT:~/Downloads$ git clone https://github.com/ugexe/zef.git Cloning in...yIndex ===> Updating cpan mirror: https://raw.githubusercontent.com/ugexe/Perl6-ec...n1.json ===> Updated cpan mirror: https://raw.githubusercontent.com/ugexe/Perl6-ec...

    1579 days ago

  • Install vcftools on Ubuntu

    ...ng vcftools (0.1.15-1) ... Setting up vcftools (0.1.15-1) ... Processing triggers for man-db (2.8.3-2ubuntu0.1) ... #MORE at https://vcftools.github.io/perl_module.html # Calc...

    1553 days ago