Raku script to find SSRs in fastq file !
....readline -> $header { $line-number++; my $sequence = $fh.readline.chomp; # Skipping the next two lines (comment and quality lines) $fh.readline;...154 days ago
Python script to convert fastq to fasta
...er = fq.readline().strip() sequence = fq.readline().strip() fq.readline() # Skip the '+' line quality = fq.readline().strip()...81 days ago
Python script to create fastq file with random sequences
...in(random.choice(bases) for _ in range(length)) def generate_random_quality(length): return ''.join(...ength): sequence = generate_random_sequence(sequence_length) quality = generate_random_quality(seq...6 days ago
Python script to parse a FASTQ file !
...uch as the sequence identifier, sequence, and quality scores #pip install biopytho..."sequence": str(record.seq), "quality": record.letter_annotations["...(f"Sequence: {seq['sequence']}") print(f"Quality: {seq['quality']}") prin...6 days ago