1108 days ago
Implementation of biological random mutation with Perl
#!/usr/bin/perl -w use strict; use warnings; #sequence for a better recognition my $DNA="AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA \ n";...2955 days ago
Insert the sequence at desire location in multi-fasta file with Perl
...t; use Bio::SeqIO; use Bio::Seq; use File::Copy; #ARGV[0] should be in following format --- Keep the coordinate sorted by name+location #GenomechrName locationStart AlienGene AlienLength...2367 days ago
Installing Busco version 4.0.6
...a -c conda-forge busco=4.0.6 Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/jit/anaconda3 add...1506 days ago
Perl script to run SATSUMA in loop !
...nome.fasta"; # Ur query genome my $tarfile = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # Location of ur SATSUMA my $maxSize =...2194 days ago
Long reads mapper bash script !
...GE: runMapper.sh minimap2 ref.fa reads.fa/fq 48 ont echo -e "This is a bash scrip to map your long reads and make it visualization ready !" #Location of the tools samtools=/home/...2176 days ago
2129 days ago
2073 days ago
Installing Platypus on Ubuntu !
...rc/build/*/python/*.py bin/ (py27) ➜ 3-unzip conda install platypus-variant Solving environment: done ## Package Plan ## environment location: /home/urbe/anaconda3/envs/py...2073 days ago
Setting up falconUnzip conda environments for genome assembly !
..._asm Solving environment: done ## Package Plan ## environment location: /home/urbe/anaconda3/envs/de...mbly Solving environment: done ## Package Plan ## environment location: /home/urbe/anaconda3/envs/de...2043 days ago