Results for "AP"
Bio-Scripts
...domreads.sh part of BBTools/BBMap https://sourceforge.net/projects/bbmap/ /genetics/elbers/bbmap-38.8.../dev/null # make 60x haploid coverage for Illumina rea...reformat.sh part of BBTools/BBMap https://sourceforge.net/proje...t k=${k}" # make 30x haploid coverage for PacBio CLR r...986 days ago
Installing Covid19 Environment !
(base) vikas@vikas-Lenovo-ideapad-320-15ISK:~/vinodLab/Genepi$ cond...##################### | 100% minimap2-2.22 | 483 KB | ##...###################### | 100% liblapack-3.9.0 | 12 KB | #...######################## | 100% graphite2-1.3.13 | 102 KB |...981 days ago
- #Installing MySQL on Ubuntu #To install MySQL on your Ubuntu server follow the steps below: First, update the apt package index by typing: sudo apt update #Then install the MySQL package wi...
977 days ago
Install Php on Ubuntu / Apache server !
#Installing PHP 7.2 with Apache #If you are using Apache as your web server to install PHP and Apache PHP module run the following command: sudo apt install php libapache2-mod-php #Once the packages are installed restart the Apache service: sudo systemctl restart apache2977 days ago
Bash script to simulate a genome !
...# Convert to diploid with approximately 2% heterozygosity...0bp # mutate.sh part of BBTools/BBMap https://sourceforge.net/proje...~2% het rate # get only 1 haplotype from the "diploid" refe..."best k=${k}" # make 30x haploid coverage for PacBio CLR r...976 days ago
- #Purge it sudo apt-get purge apache2 #Auto remove sudo apt-get autoremove #Remove sudo rm -rf /etc/apache2 #Try this sudo apt remove apache2.*
974 days ago
Installing manadatory software for websites hosting !
#See all the installed apt list --installed apt list #Installing Apache #To install Apache, install the latest meta-package a...2 by running: sudo apt update sudo apt install apache2 #Install...rge php7.* #Install PHP again sudo apt-get install php7.2974 days ago
Installing manadatory software for websites hosting !
#See all the installed apt list --installed apt list #Installing Apache #To install Apache, install the latest meta-package a...2 by running: sudo apt update sudo apt install apache2 #Install...rge php7.* #Install PHP again sudo apt-get install php7.2 #Insta...974 days ago
Extract fasta header with ids !
...--db ../../../../DATABASE/minikraken_20171019_8GB.tgz out.fa more out.fa_class.txt | grep "227859" | awk '{print $2}' > all_real_ids.txt minimap2 -t 36 -k19 -w5 -A1 -B2 -O3,1...935 days ago
- bowtie2-build toy_dataset_contig_for_mapping.fasta toy_dataset_contig_for_mapping.btindex bowtie2 -x toy_dataset_contig_for_mapping.btindex -f -U toy_dataset_reads_for_ma..._mapped_species1.sam samtools sort toy_dataset_mapped_species1.bam -o toy_datase...
925 days ago
