Results for "B"
Bio-Scripts
Setting up falconUnzip conda environments for genome assembly !
...py_1 18 KB conda-forge pb-assembly...phy: 2.3.1-py27hdffb7b8_0 conda-forge c...python-sortedcontain | 25 KB | #######################...# # https://github.com/PacificBiosciences/pbbioc...2043 days ago
- ...m/questions/6373277/git-sync-local-repo-with-remote-one This makes your local repo exactly like your remote repo. Remember to replace origin and master with the remote and branch that you want to synchro...
2035 days ago
Perl script to split fasta sequence and create overlaps
#!/usr/bin/perl use strict; use warnings; my $len = 5000; my $over = 200; my $seq_id=$ARGV[0]; my $seqFile = $ARGV[1]; my $seq; open(my $fh, "2025 days ago
Split the multifasta in separate files !
cat Avaga_allPalindrome.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'2011 days ago
Backward Elimination with Python
#Backward Elimination with p-value...tsmodels.formula.api as sm def backwardElimination(x, sl):...0, 1, 2, 3, 4, 5]] X_Modeled = backwardElimination(X_opt, SL)...tsmodels.formula.api as sm def backwardElimination(x, SL):...) if (adjR_before >= adjR_after):...2008 days ago
Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while (...l[13]}++; } foreach my $word ( sort { $count_of{$a} $count_of{$b} } keys %count_of ) { pr...1954 days ago
- bwa aln -t 8 targetGenome.fa reads.fastq | bwa samse targetGenome.fa - reads.fastq\ | samtools view -bt targetGenome.fa - | samtools sort - reads.bwa.targetGenome samtools index reads.bwa.targetGenome.bam
1887 days ago
- my @tests = ( ["FOO", "BAR"], ["CRATE", "TRACE"], ["CRATE", "CRATE"], ["TRACE", "CRATE"],...($w1, $w2) = @$word_pair; my $simw = simw $w1, $w2; say "distance between $w1 and $w2 is: ", 1 -...
1853 days ago
- Download page https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download Ubuntu / Debian sudo apt-get install ncbi-blast+ CentOS # d...rsion wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2...
1815 days ago
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutat...romeSimulated.fa 3319 ~/Tools/art_bin_MountRainier/art_illumina -...10 -o paired_dat 3320 ~/Tools/art_bin_MountRainier/art_illumina -.../bin/masurca sim.conf 3327 ./assemble.sh 3328 cd .. 3329 ~/...1789 days ago
