Results for "UP"
Bio-Scripts
...https://getcomposer.org/installer', 'composer-setup.php');" ACTUAL_CHECKSUM="$(php -r "echo hash_file('sha384', 'composer-setup.php');")" if [ "$EXPECTED_...ser-setup.php exit 1 fi php composer-setup.php --quiet RESULT=$? rm co...959 days ago
- $ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.
959 days ago
Extract fasta sequences with ids in another file !
#Ids are in test.txt - one ids per line #sequences are in test.fa grep -w -A 2 -f test.txt test.fa --no-group-separator # seqtk seqtk subseq test.fa test.txt #faSomeRecods faSomeRecords in.fa listFile out.fa # seqkit seqkit grep -n -f list.txt sequences.fas > newfile2.fas946 days ago
Run Pango on your multifasta file !
...va_all_samples_combined.fa (pangolin) [jnarayan@hn1 FASTA]$ pangolin --update pangolin already latest release (v3.1.16) pangolearn updated to 2021-11-18 constella...944 days ago
- Lenovo-ideapad-320-15ISK:~/VANSH$ conda update -n base conda Collecting package...nment location: /home/Jit/anaconda3 added / updated specs: - conda...15.3 MB The following packages will be UPDATED: backports.functoo~...
919 days ago
- #To update the linux OS -- run the following sudo -- sh -c 'apt-get update; apt-get upgrade -y; apt-get dist-upgrade -y; apt-get autoremove -y; apt-get autoclean -y' #OR sudo apt-get update && sudo apt-get upgrade
917 days ago
Extract all fasta sequences except ids !
awk 'BEGIN{while((getline0)l[">"$1]=1}/^>/{f=!l[$1]}f' genomic.fna > filtered_without_omi.fasta #extract subseq seqtk subseq omi_ids.fa omi_single_id.txt > omi_si...885 days ago
- ...## environment location: /home/abhi/anaconda3/envs/abhi added / updated specs: - ruby...-forge/linux-64::ruby-2.6.6-he592edb_2 The following packages will be SUPERSEDED by a higher-priority c...
882 days ago
- ...## environment location: /home/abhi/anaconda3/envs/mgsc added / updated specs: - graphviz...readline pkgs/main/linux-64::readline-8.1.2-h7f8727e_1 setuptools pkgs/main/linux-...
882 days ago
- ...s a several minutes to compile so we’ll use one which has already been setup. If we were to install R, we...e commented out the code below, however it is exactly what was run to set up the R we will be using, excep...
880 days ago
