Results for "C"
Bio-Scripts
Bash command to install bwa, samtools, picard !
...base) [wsu29@bladeamd-2 tmp]$ conda install bwa Collecting package metadata (re...2019.03-py37_0 --> custom-py37_1 Proceed ([y]...10a08f8_12 299 KB bioconda --------------------...2.10 | h14c3975_0 88 KB ---...1607 days ago
Bash command to install GATK, Bedtools and SnpEff !
...GATK) [wsu29@bladeamd-2 tmp]$ conda install gatk Collecting package metadata (re...-1.2_17 | r36h96ca727_0 3.8 MB r-m...-cli-1.1.0-r36h6115d3f_0 r-colorspace pkgs/r/linux-6...################ | 100% r-mgcv-1.8_28 | 2.6 MB |...1607 days ago
- ...e at https://developer.nvidia.com/cuda-downloads?target_os=Linux&target_arch=x86_64&target_distro=Ubuntu&.../cuda/repos/ubuntu1804/x86_64/cuda-ubuntu1804.pin Resolving...on/octet-stream] Saving to: ‘cuda-ubuntu1804.pin’ cuda-ub...00:247:2063:46e:21d:825:102e Connecting to developer.downloa...
1605 days ago
- ...do apt install npm Reading package lists... Done Building dependency tree Reading state i...rchive.ubuntu.com/ubuntu bionic/universe amd64 node-pseudomap...Get:59 http://in.archive.ubuntu.com/ubuntu bionic/...ode-rimraf. Preparing to unpack .../44-node-rimraf_2.6.2-1_a...
1604 days ago
- ...password for jit: Reading package lists... Done Building dependency tree Reading state i...d. Need to get 5,316 kB of archives. After this operation,...1 [981 kB] Get:4 http://in.archive.ubuntu.com/ubuntu bionic/...cting previously unselected package nqp. Preparing to unpack...
1602 days ago
- ...-Pro-3335-MT:~/Downloads$ git clone https://github.com/ugexe/zef.git Cloning into...15), reused 153 (delta 81), pack-reused 10037 Receiving obje...: zef:ver:auth:api 1 bin/ script [zef] installed to: /hom...mirror: https://raw.githubusercontent.com/ugexe/Perl6-ecosyst...
1602 days ago
Perl script to delete the adjacent repeats !
...#Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='ATTTTTTGGC'; # This should be converted...1/$1/g #Alternatively, if you want to ignore case when comparing, you could...1602 days ago
Install Nucmer on Linux / Ubuntu
...] password for jit: Reading package lists... Done Building dependency tree Reading state i...installed: gawk Suggested packages: gawk-doc The follow...e will be used. Do you want to continue? [Y/n] Y Get:1 http:/...lecting previously unselected package mummer. Preparing to unp...1601 days ago
Install python pip and numpy on Linux / Ubuntu
...install python-pip Reading package lists... Done Building dependency tree Reading state i...packages: python-crypto-doc python-dbus-dbg python-dbus-d...Get:9 http://in.archive.ubuntu.com/ubuntu bionic/...7.15~rc1-1_amd64.deb ... Unpacking libpython-all-dev:amd64 (...1601 days ago
Install miniasm in Linux / Ubuntu
...apt install miniasm Reading package lists... Done Building dependency tree Reading state i...minimap The following NEW packages will be installed: mi...e will be used. Do you want to continue? [Y/n] Y Get:1 http:/...g miniasm (0.2+dfsg-2) ... Selecting previously unselected pac...1601 days ago
