Bash command to install bwa, samtools, picard !
...base) [wsu29@bladeamd-2 tmp]$ conda install bwa Collecting package metadata (re...2019.03-py37_0 --> custom-py37_1 Proceed ([y]...10a08f8_12 299 KB bioconda --------------------...2.10 | h14c3975_0 88 KB ---...1610 days ago
Bash command to install GATK, Bedtools and SnpEff !
...GATK) [wsu29@bladeamd-2 tmp]$ conda install gatk Collecting package metadata (re...-1.2_17 | r36h96ca727_0 3.8 MB r-m...-cli-1.1.0-r36h6115d3f_0 r-colorspace pkgs/r/linux-6...################ | 100% r-mgcv-1.8_28 | 2.6 MB |...1610 days ago
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Perl script to delete the adjacent repeats !
...#Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='ATTTTTTGGC'; # This should be converted...1/$1/g #Alternatively, if you want to ignore case when comparing, you could...1605 days ago
Install Nucmer on Linux / Ubuntu
...] password for jit: Reading package lists... Done Building dependency tree Reading state i...installed: gawk Suggested packages: gawk-doc The follow...e will be used. Do you want to continue? [Y/n] Y Get:1 http:/...lecting previously unselected package mummer. Preparing to unp...1605 days ago
Install python pip and numpy on Linux / Ubuntu
...install python-pip Reading package lists... Done Building dependency tree Reading state i...packages: python-crypto-doc python-dbus-dbg python-dbus-d...Get:9 http://in.archive.ubuntu.com/ubuntu bionic/...7.15~rc1-1_amd64.deb ... Unpacking libpython-all-dev:amd64 (...1605 days ago
Install miniasm in Linux / Ubuntu
...apt install miniasm Reading package lists... Done Building dependency tree Reading state i...minimap The following NEW packages will be installed: mi...e will be used. Do you want to continue? [Y/n] Y Get:1 http:/...g miniasm (0.2+dfsg-2) ... Selecting previously unselected pac...1605 days ago