Results for "C"
Bio-Scripts
Installing ggplot2 and its dependencies on Ubuntu !
...-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for St...ocessor... gcc -std=gnu99 -E checking for grep that handles...DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-...lib -lR installing to /usr/local/lib/R/site-library/colorspa...1601 days ago
- ...[wsu29@bladeamd-2 testGATK]$ conda update -n base -c defaults conda Collecting package metadata (current_repodata.json): done S...0.15.46-py37h14c3975_0 --> 0.15.87-py37h7b6447...################## | 100% pycosat-0.6.3 | 82 KB...
1598 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197...uninfo > runinfo.txt # Select the first N elements. Keep o...-X 1000 --split-files {} # Create a directory for bam file...erting the process is to extract reads, tagged with readgroup...1594 days ago
- ...password for jit: Reading package lists... Done Building dependency tree Reading state i...et:1 http://in.archive.ubuntu.com/ubuntu bionic/main amd64 li...[178 kB] Get:11 http://in.archive.ubuntu.com/ubuntu bionic/...9.5+dfsg-0ubuntu2.5) ... Selecting previously unselected pac...
1592 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
$MT:~/Downloads/chaos$ sudo apt-get install python-numpy python-scipy python-matplotlib Reading package lists... Done Building d...Selecting previously unselected pac...0-8) ... Setting up python-decorator (4.1.2-1) ... Setting...1592 days ago
- ...~$ sudo apt-get install python3-smbc Reading package lists... Done Building d...Selecting previously unselected package python3-smbc. (Reading d...u2.15 [72.2 kB] Get:2 http://in.archive.ubuntu.com/ubuntu bionic-...reating config file /etc/samba/smb.conf with new version Setting...
1591 days ago
- (py36) [wsu29@bladeamd-2 lofreq]$ lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.7 (Final) Release: 6.7 Codename: Final
1590 days ago
Install snakemake and activate on conda
$ conda create -c bioconda -c conda-forge -n snakemake snakemake $ conda activate snakemake1589 days ago
Bash oneliner to extract all ids from a multifasta file
#List of ids - one per line in allIds.txt $ awk 'BEGIN{while((getline0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa # You can play with this f=!l[$1 ] if wanted to extract or not extract the ids1589 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages j...rot Foundation. Hello, I'm Configure. My job is to poke an...ch - Determine CPU architecture and type, and OS.......Does your platform support pcre...............yes, 8.39. a...1588 days ago
