Results for "R"
Bio-Scripts
Install python pip and numpy on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install python-pip Reading package lists... Done...ue? [Y/n] Y Get:1 http://in.archive.ubuntu.com/ubuntu bionic...Get:11 http://in.archive.ubuntu.com/ubuntu bionic...Unpacking python-dev (2.7.15~rc1-1) ... Selecting previousl...1589 days ago
Install miniasm in Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install miniasm Reading package lists... Done B...ilding dependency tree Reading state information... Do...lled: miniasm minimap 0 upgraded, 2 newly installed, 0 to...-2 [29.3 kB] Get:2 http://in.archive.ubuntu.com/ubuntu bionic...1589 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo] password for jit:...MD5 sums checked checking for R_HOME... /usr/lib/R checkin...e -D_FORTIFY_SOURCE=2 -g -c stri_join.cpp -o stri_join.o g++...-O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -f...1589 days ago
- ...ollecting package metadata (current_repodata.json): done Solv...-|----------------- asn1crypto-1.3.0 |...0-py37_0 --> 19.1.0-py37_0 requests...############### | 100% asn1crypto-1.3.0 | 164 KB | #...
1585 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The num...e project. N=5 # Get the project run information. esearc...qToSam F1=reads/{}_1.fastq F2=reads/{}_1.fastq O=bam/{}.bam...1581 days ago
- $MT:~/Downloads/cgr-perl$ sudo apt-get install gnuplot [sudo] password for jit: Reading package l...ue? [Y/n] Y Get:1 http://in.archive.ubuntu.com/ubuntu bionic...nic-updates/main amd64 libqt5printsupport5 amd64 5.9.5+dfsg-0...ckage libqt5widgets5:amd64. Preparing to unpack .../06-libqt...
1580 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
...thon-scipy python-matplotlib Reading package lists... Done Building dependency tree Reading state infor...ckages: blt-demo libjs-jquery-ui-docs python-cycler-doc dv...1 [60.6 kB] Get:7 http://in.archive.ubuntu.com/ubuntu bionic...to unpack .../04-python-backports.functools-lru-cache_1.4-2_a...1580 days ago
- jit@jit-HP-Pro-3335-MT:~$ java -version openjdk version "11.0.6" 2020-01-14 Open...ufw allow 9191 [sudo] password for jit: Rules updated Ru...5.6-1build2) ... jit@jit-HP-Pro-3335-MT:~$ sudo apt-get inst...[1,926 kB] Get:6 http://in.archive.ubuntu.com/ubuntu bionic...
1579 days ago
- (py36) [wsu29@bladeamd-2 lofreq]$ lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.7 (Final) Release: 6.7 Codename: Final
1578 days ago
Install snakemake and activate on conda
$ conda create -c bioconda -c conda-forge -n snakemake snakemake $ conda activate snakemake1577 days ago
