Results for "C"
Bio-Scripts
(JitMetaENV) ➜ fastQC_out conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1270 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1270 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json...ving environment: failed with repodata from current_repodata.json, will ret...: done ==> WARNING: A newer version of conda exists....
1270 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json)...t: done ==> WARNING: A newer version of conda exists. 2.13.1-h7e3eb15_....10-h72842e0_3 --> 2.9.10-h68273f3_2 Proceed ([y]/n)?
1269 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): don...ng environment: failed with repodata from current_repodata.json, will ret...done ==> WARNING: A newer version of conda exists....
1269 days ago
- ...pen and paper the assemble it. If you are brave enough, you can try to assemble this set of reads: CAGATGTCCT GACCTTTTCT TAAGATCTTT TCTTTAGCCG TTTCTTCTTT GAGCTTTACT TTACTTCATT TCATTC...
1269 days ago
- (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1269 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1269 days ago
Install asciigenome using conda !
(JitMetaENV) ➜ viruses conda install -c bioconda asciigenome Collecting package metadata (current_repodata.json): / done Solving environment: done ==> WARNING: A newer version of conda exists.1269 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old...2_8GB_201904.tgz % Total % Received % Xferd Average Speed...dir krakenDB (JitMetaENV) ➜ day3 cd krakenDB (JitMetaENV) ➜ kr..._v2_8GB_201904_UPDATE/hash.k2d #Check for pe reads #kraken2 --...1268 days ago
