Results for "PE"
Bio-Scripts
...current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3/envs/ added / updated specs: - megahit The fo...1106 days ago
- ...## environment location: /home/anaconda3/envs/ added / updated specs: - kat The follow...pkgs/main::libxslt-1.1.34-hc22bd24_0 The following packages will be SUPERSEDED by a higher-priority ch...
1106 days ago
- ...current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3/envs/ added / updated specs: - odgi The follo...
1106 days ago
- ...t_repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3/envs/jitENV added / updated specs: - seqwish The fo...
1106 days ago
Commandline to Extract a list of specific read IDs from a bam file
#Save all the IDs in IDs.txt file #Run it on BAM file samtools view file.bam | fgrep -w -f IDs.txt1056 days ago
Perl onliner to print fasta headers !
#Save all your fasta in seq.fa and run the following ... perl -ne 'print if /^>/' seq.fa #Print header with line number perl -ne 'print "$. $_" if /^>/ ' seq.fa1056 days ago
- ...ment location: /home/urbe/anaconda3/envs/JitMetaENV added / updated specs: - bwise The foll...`Bwise --help` and/or check the logs files of the various steps of the pipeline (logs/logBloo coo...
1050 days ago
Commandline for paired end reads simulation with BBMap !
..., unique=true insRate=0.0, max=0, len=(0-0) delRate=0.0, max=0, len=(0-0) subRate=0.0, max=0, len=(0-0) nRate =0.0, max=0, len=(0-0) genome=1 PERFECT_READ_RATIO=0.0 ADD_ERRO...1050 days ago
- ...$ sudo apt install jellyfish Reading package lists... Done Building dependency tree Reading st...remove and 0 not upgraded. Need to get 418 kB of archives. After this operation, 808 kB of additional d...
1041 days ago
Print in terminal with python !
#!/usr/bin/env python import time import curses def pbar(window): height, width = window.getmaxyx() for i in range(10): window.addstr(height -1, 0, "[" + ("=" * i) + ">" + (" " * (10 - i )) + "]") window.refresh() time.sleep(0.5) curses.wrapper(pbar)1038 days ago
