Results for "PE"
Bio-Scripts
Run Pango on your multifasta file !
...rayan@hn1 FASTA]$ pangolin Input_for_Cova_all_samples_combined.fa All dependencies satisfied. The query...more info please refer to: https://scikit-learn.org/stable/modules/model_persistence.html#security-mainta...947 days ago
- ...taset_contig_for_mapping.btindex bowtie2 -x toy_dataset_contig_for_mapping.btindex -f -U toy_dataset_reads_for_mapping.fasta -S toy_dataset_mapped_species1.sam samtools sort toy...
927 days ago
- ...(current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/Jit/anaconda3 added / updated specs: - conda The foll...
922 days ago
Perl script to rename the fasta file !
#Script #1 #!/usr/bin/perl -w use strict; #USAGE #perl extractPattern.pl kmerfasta > uniref100_result_broad my %kHash; local $/ = '>'; my $infile2 = "$ARGV[0]"; # Kmer fasta open( FH2, '918 days ago
- ...ects/tdm-gcc/ Once you download and install the compiler, you need to open the cmd, navigate to the fol...wFileName" to w/e you want to name each exe file. The exe files will appear in the same folder.
910 days ago
Installing SEVA environment in Conda !
...############################################################## | 100% _openmp_mutex-4.5 | 22 KB |...######################################################### | 100% r-reshape2-1.4.4 | 135 KB | ####...897 days ago
Extract all fasta sequences except ids !
...id.txt > omi_kmer19.fa #reformat to 19mer reformat.sh in=omi_kmer19.fa out=omi_kmer19_formated.fa fastawrap=19 #Extract and number the kmers perl storeKmer.pl omi_kmer19_for...888 days ago
- ...nvironment location: /home/abhi/anaconda3/envs/abhi added / updated specs: - ruby The follo...forge/linux-64::ruby-2.6.6-he592edb_2 The following packages will be SUPERSEDED by a higher-priority ch...
885 days ago
- ...----|----------------- _openmp_mutex-4.5 |..._1 474 KB intel-openmp-2022.0.1 | h06a430...ig-2.12.6-h49f89f6_0 freetype pkgs/main/linux-64:...################## | 100% _openmp_mutex-4.5 | 22 KB |...
885 days ago
bash script to extract sequence by ids !
Use a Perl one-liner, grep and seqtk subseq to extract the desired fasta sequences: # Create test input: cat > in.fasta BGI_novel_T016313 Solyc03g025570.2.1 TTCAA...883 days ago
