2141 days ago
Perl script to find palindromic pattern !
#!/usr/bin/perl use strict; use warnings; use strict; my %invert; @invert{ qw[ A C G T ] } = qw[ T G C A ];...), substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA__ A...2141 days ago
2117 days ago
2117 days ago
2076 days ago
2068 days ago
2046 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@S...-pe.mapped.sorted.$i.bam; java -Xmx2g -jar $(which CollectGcBiasMetrics.jar) R=data/Cdif...2046 days ago
1595 days ago
Perl script to remove duplicated lines !
#!/usr/bin/perl use strict; use warnings; { $_ = ; my $next_line; while( $next_line = ) {...line; } continue { $_ = $next_line; } print $_ if eof; } __DATA__ a...1602 days ago