Bash oneliner to extract all ids from a multifasta file
#List of ids - one per line in allIds.txt $ awk 'BEGIN{while((getline0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa # You can play with this f=!l[$1 ] if wanted to extract or not extract the ids1590 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages jit@jit-HP-Pro-3335-MT:~/Downloads/parrot-8.1.0$ wget ftp://ftp....1589 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python wget...2150 days ago
2127 days ago
2127 days ago
Installing pb-assembly on Linux !
...ly and not for use # # in diagnostic procedures, intended only for command-line users, and # # possib...ly and not for use # # in diagnostic procedures, intended only for command-line users, and # # possib...2086 days ago
2086 days ago
2078 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypus.git Cloning into 'Platypus'... remote: Enumerating objects: 1394, do...2071 days ago
Setting up falconUnzip conda environments for genome assembly !
...ly and not for use # # in diagnostic procedures, intended only for command-line users, and # # possib...ly and not for use # # in diagnostic procedures, intended only for command-line users, and # # possib...2042 days ago